Example GSEA result for plot_pathways and plot_pathway_correlation_network

A pre-computed GSEA result generated by run_gsea() using a random gene-level statistic vector drawn from the hallmark_t2g gene universe. Bundled so that plot_pathways() examples can run without requiring clusterProfiler to be installed or an internet connection.

Usage

ex_gsea_result

Format

A list with three elements as returned by run_gsea():

gsea_result

A gseaResult object.

gene_vec

Named numeric vector of gene-level statistics (sorted decreasing).

term2gene

Data frame with columns term and gene.

Source

Generated by inst/prepare_data/ex_gsea_result.R.

See also

run_gsea(), plot_pathways(), plot_pathway_correlation_network()