A two-column data frame mapping MSigDB Hallmark gene-set names to human gene
symbols, as retrieved from MSigDB v2024.1 via the msigdbr package. The
"HALLMARK_" prefix has been stripped from term names for brevity.
Format
A data frame with 7,322 rows and 2 columns:
- term
Character. Hallmark gene-set name (
"HALLMARK_"prefix removed).- gene
Character. HGNC gene symbol.
Source
Retrieved with msigdbr(species = "Homo sapiens", collection =
"H") and regenerated by inst/prepare_data/hallmark_t2g.R.
Details
This object is provided as bundled package data so that
run_gsea, plot_pathways, and
plot_pathway_correlation_network examples can run without an
internet connection or an msigdbr installation.