A two-column data frame mapping each MSigDB Hallmark gene-set name to its
biological process category, as defined in Table 1 of Liberzon et al.
(2015). Categories are: "cellular_component", "development",
"DNA_damage", "immune", "metabolic", "pathway",
"proliferation", and "signaling".
Format
A data frame with 50 rows and 2 columns:
- term
Character. Hallmark gene-set name, with the
"HALLMARK_"prefix removed to match thetermcolumn ofhallmark_t2g.- process_category
Character. Biological process category assigned in Liberzon et al. (2015), Table 1.
Source
Process categories taken from Table 1 of Liberzon et al. (2015).
Data prepared by inst/prepare_data/hallmark_pathway_categories.R.
References
Liberzon, A., Birger, C., Thorvaldsdóttir, H., Ghandi, M., Mesirov, J. P., & Tamayo, P. (2015). The Molecular Signatures Database hallmark gene set collection. Cell Systems, 1(6), 417–425. doi:10.1016/j.cels.2015.12.004