A four-column data frame mapping each MSigDB Hallmark gene-set name to its
biological process category, as defined in Table 1 of Liberzon et al.
(2015), along with human-readable pathway labels. Categories are:
"Cellular component", "Development", "DNA damage",
"Immune", "Metabolic", "Pathway", "Proliferation",
and "Signaling".
Format
A data frame with 50 rows and 4 columns:
- term
Character. Hallmark gene-set name, with the
"HALLMARK_"prefix removed to match thetermcolumn ofhallmark_t2g.- process_category
Character. Biological process category assigned in Liberzon et al. (2015), Table 1, with underscores replaced by spaces.
- label_plot
Character. Concise human-readable pathway label used for figures
- label_text
Character. Expanded human-readable pathway label used for in-text references with Greek symbols spelled out (e.g. alpha, beta) and lowercase first letter.
Source
Process categories taken from Table 1 of Liberzon et al. (2015).
Labels prepared by inst/prepare_data/hallmark_pathway_categories.R.
References
Liberzon, A., Birger, C., Thorvaldsdóttir, H., Ghandi, M., Mesirov, J. P., & Tamayo, P. (2015). The Molecular Signatures Database hallmark gene set collection. Cell Systems, 1(6), 417–425. doi:10.1016/j.cels.2015.12.004